rs31520117 SNP Detail

Summary

• ID
  rs31520117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66900892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT GAAACATCAA TTTTCAGTTT
  K
  GAGACACCTG TACTGAACAA ATCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45042299	mCV23098097	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss144520292	ENSMUSSNP5768189	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319758724	CHEV_1_66908307	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31520117					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66900892 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	within coordinates
Cpgi339	CpG island 339	968 bp proximal
Rr412477	regulatory region 412477	81 bp proximal
Rr412478	regulatory region 412478	517 bp proximal
Rr412479	regulatory region 412479	1534 bp proximal
Tssr12011	transcription start site region 12011	1521 bp downstream
Tssr12012	transcription start site region 12012	1532 bp downstream
Tssr12013	transcription start site region 12013	1562 bp downstream
Tssr12014	transcription start site region 12014	1567 bp downstream
Tssr12015	transcription start site region 12015	1584 bp downstream
Tssr12016	transcription start site region 12016	1608 bp downstream