rs31520204 SNP Detail

Summary

• ID
  rs31520204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78134107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTTCCAT GGATCCCGCC TAAAAGCACG GCAACCCCTT
  TGCCTGAGTC TCTAGAGATG GCAGTGAAGT GAAGCAGAAG TGCATGGCAG AGTAAACCAG
  R
  TGCAAGCAGA GGAGCTGGAG AAGAACATGG TCCCTTAGTC CCCTTCAAGG CAATCCCTGG
  GGACCCAAGG ACGTCCCATG AGGCTCCCTA CCTAGAGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061025	NES12086644	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	G	G	A	G	G	A	G
ss148180800	ENSMUSSNP6364806	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31520204					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061025	NES12086644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78134107 () rs orientation: forward

Symbol	Name	Function Class
Ncf4	neutrophil cytosolic factor 4	Intron
Rr505230	regulatory region 505230	1830 bp distal
Rr505231	regulatory region 505231	1036 bp distal
Rr505232	regulatory region 505232	1902 bp proximal
Tssr131900	transcription start site region 131900	1954 bp downstream
Tssr131901	transcription start site region 131901	1834 bp downstream
Tssr131902	transcription start site region 131902	708 bp upstream
Tssr131903	transcription start site region 131903	981 bp upstream