rs31520571 SNP Detail

Summary

• ID
  rs31520571
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125871055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGGGGGCT TTTTCTATGA
  ATAAAATAGT ATGCTGCATG GGAGACTGGG CCTCTGGAAG GATGCGTTCG TTGTTCCCAC
  TCTGTCGCCA TCTCTGCTCG ATCGCCCCAC CTGCATCCAG GCTACAATTT CCGGTTAATG
  AACAAAGCTC TTCACACCCG GGTGGCTTTG CACAGCTGCT GCTTCAGCCA GGAACCCCCC
  M
  CCCCCTTCTT CCGTTCTGCT ATACACCTTT AATCCCAGCT TTTCCTTAAA CTTACTTCGC
  GGTCTCCCTA CAGCAGAGCT CGAAAGTTCT GCCTGAACCC TGCACGGCCC CACAGACCCC
  AGGTCTCTGA GTAGCCTAGT AGTCTTATGA GGTCCCCTGG AAATCGAATG GATAGGTGGA
  AGGATGAATG GGCAGACAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss46040855	mCV25172296	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs31520571					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125871055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	within coordinates
Rr368426	regulatory region 368426	within coordinates
Rr381444	regulatory region 381444	833 bp downstream
Rr655453	regulatory region 655453	246 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	530 bp upstream
Tssr69003	transcription start site region 69003	545 bp upstream
Tssr69004	transcription start site region 69004	561 bp upstream
Tssr69005	transcription start site region 69005	580 bp upstream
Tssr69006	transcription start site region 69006	592 bp upstream
Tssr69007	transcription start site region 69007	623 bp upstream
Tssr69008	transcription start site region 69008	643 bp upstream
Tssr69009	transcription start site region 69009	706 bp upstream
Tssr69010	transcription start site region 69010	901 bp upstream
Tssr69011	transcription start site region 69011	964 bp upstream