rs31520809 SNP Detail

Summary

• ID
  rs31520809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8971686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAAGTAG GCTTCAGAGA
  GATGGGGGAA GGACAGAAAT CCAATCCTTT AGCCTACTTG CGAGCCCTCC TTTCTGGTCT
  GAGCCTAGAG GGCCACGCCA GAATGGTAGC CACGCCCCTT CCCGCAGGCA CGCCCCGACA
  GGCCCAACAA TAGAGCACGA ATACGTCACG TGGGCCTCGC AGTGACAAAG ACAACGTGGC
  R
  AAAGACAGCG CCAAAAATCT CCGTGCCCGC TGTCTGCCAC CAACTCCGTC TTGTTTCACC
  CTTCTCCTCC TTGCGGAGCT CGTCTGGGAG ACGGTGAATT ACCGAGTTAC CCTCAATTCC
  TACAGCCCCC GACAGCGAGC CCAGCCACGC GCACCGCGGT CAAACAGCGC CGGAGAGAGT
  TGAACTTTTG ATTGGGCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47061592	NES11269270	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G		A	G	G		A
ss323886813	CHEV_12_8928492	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31520809					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47061592	NES11269270	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8971686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	within coordinates
Gm60663	predicted gene, 60663	within coordinates
Laptm4a	lysosomal-associated protein transmembrane 4A	386 bp upstream
Rr403227	regulatory region 403227	119 bp upstream
Rr462715	regulatory region 462715	78 bp distal
Rr462716	regulatory region 462716	within coordinates
Rr462717	regulatory region 462717	60 bp proximal
Rr462718	regulatory region 462718	163 bp proximal
Rr462719	regulatory region 462719	917 bp proximal
Rr462720	regulatory region 462720	1664 bp proximal
Tssr112751	transcription start site region 112751	15 bp downstream
Tssr112752	transcription start site region 112752	1 bp upstream
Tssr112753	transcription start site region 112753	21 bp upstream
Tssr112754	transcription start site region 112754	331 bp upstream
Tssr112755	transcription start site region 112755	356 bp upstream
Tssr112756	transcription start site region 112756	375 bp upstream
Tssr115725	transcription start site region 115725	158 bp downstream