rs31520812 SNP Detail

Summary

• ID
  rs31520812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8972653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGGAGG GGATGGGAAT
  AGGATCGTCA TTTCGGGTTC GGGAAGTGCG CAACCCTCAT CCCGCCCCAC CCCCCCATCG
  AAACAATTAT TGTCCCGCAG TTATGCAGCC AGTTCGGACG TTTTGTCCGA ATCGAAAGCG
  AAATCCAGTT CGGGTGCCTC CTGCAGTTTT TGTTGAGGCG TTCGGTGATG TAGCCAGAGG
  Y
  CTCTGTTTTG AGTCTAGACG TTAGCCAGAA TTTACAGTGG GTCAGATTTT CCTCATTACA
  CCCCCTCCCT GCCTTGTCAG GTGGGTTTTC ATCCCAAGGC CGCCTTGGTT TGGAAGAGAT
  GTTTATTGAA AGCCTGCTAT GTCCTTACTG ACATTTTCTG GGCTCCAGGA TCTGTGTGAT
  TCTGTCACAG CAGATGGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47061595	NES11269271	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	T	T		T
ss323886816	CHEV_12_8929459	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31520812					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47061595	NES11269271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8972653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	73 bp distal
Gm60663	predicted gene, 60663	794 bp upstream
Laptm4a	lysosomal-associated protein transmembrane 4A	within coordinates
Rr403227	regulatory region 403227	547 bp downstream
Rr462715	regulatory region 462715	1045 bp distal
Rr462716	regulatory region 462716	805 bp distal
Rr462717	regulatory region 462717	886 bp distal
Rr462718	regulatory region 462718	304 bp distal
Rr462719	regulatory region 462719	29 bp distal
Rr462720	regulatory region 462720	697 bp proximal
Tssr112751	transcription start site region 112751	982 bp downstream
Tssr112752	transcription start site region 112752	949 bp downstream
Tssr112753	transcription start site region 112753	943 bp downstream
Tssr112754	transcription start site region 112754	625 bp downstream
Tssr112755	transcription start site region 112755	599 bp downstream
Tssr112756	transcription start site region 112756	536 bp downstream
Tssr115725	transcription start site region 115725	780 bp upstream