rs31521075 SNP Detail

Summary

• ID
  rs31521075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45225072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCT TCAGCTGTGG GAAATGAGCC
  Y
  GTAGGCCTCC CAAATGGATT CTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39297641	mCV25250209	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31521075					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45225072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	1110 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Gm63525	predicted gene, 63525	1552 bp downstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	580 bp upstream
Rr491040	regulatory region 491040	178 bp proximal
Tssr4380	transcription start site region 4380	1153 bp downstream
Tssr125199	transcription start site region 125199	549 bp upstream
Tssr125200	transcription start site region 125200	577 bp upstream
Tssr125201	transcription start site region 125201	841 bp upstream
Tssr125202	transcription start site region 125202	961 bp upstream
Tssr125203	transcription start site region 125203	1038 bp upstream
Tssr125204	transcription start site region 125204	1281 bp upstream