rs31521352 SNP Detail

Summary

• ID
  rs31521352
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78137878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGCCTG GCTGGAGAGA
  GAAGCAAGGT ATGCAGACGG GATCAAGGAG CTGGGTCACA AAAGTCACGG TTGACAAATC
  CTTGAGTGCA CCAAGCTCAA GGAATGAATA TTTGTGCTGA GCTCTGGAAT GCAGTGCCTG
  CCCCAGAGCA CCTGCGGCCC AGGGGAGACC CTTACAAGGT AGTGAGCACC CTGTCAACAG
  W
  AGCATCCAAG CCATGGTCTG CTGGAAAGCC TTCCTGGCTG TCCAGAGGTC CTTTACAGCT
  GGAGTGCTCT GGCTTTGGAG ACTTTTGTTT GGATGGGTGC TTTGGAGCGA GTAAGCAGTC
  CTCTCTCAGG AAGTCTCAGC TTCCTTCTGT TATGAGACGA ACAGTCCCAC CCTCCCCGGC
  TCTCAGCTCC CAATGAGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48061045	NES12086554	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31521352					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061045	NES12086554	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78137878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	1058 bp proximal
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505232	regulatory region 505232	1848 bp distal
Rr505233	regulatory region 505233	1740 bp distal
Rr505234	regulatory region 505234	1286 bp proximal
Tssr131904	transcription start site region 131904	445 bp downstream
Tssr131905	transcription start site region 131905	375 bp downstream
Tssr131906	transcription start site region 131906	1186 bp upstream