rs31521685 SNP Detail

Summary

• ID
  rs31521685
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8972789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGGGTCAG ATTTTCCTCA TTACACCCCC TCCCTGCCTT
  GTCAGGTGGG TTTTCATCCC AAGGCCGCCT TGGTTTGGAA GAGATGTTTA TTGAAAGCCT
  K
  CTATGTCCTT ACTGACATTT TCTGGGCTCC AGGATCTGTG TGATTCTGTC ACAGCAGATG
  GACGGGCTTG TTGGTTCCAT ATTCGGCAGA AAGTCTTGTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47061598	NES11269272	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31521685					SNP	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47061598	NES11269272	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8972789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	209 bp distal
Gm60663	predicted gene, 60663	930 bp upstream
Laptm4a	lysosomal-associated protein transmembrane 4A	within coordinates
Rr403227	regulatory region 403227	683 bp downstream
Rr462715	regulatory region 462715	1181 bp distal
Rr462716	regulatory region 462716	941 bp distal
Rr462717	regulatory region 462717	1022 bp distal
Rr462718	regulatory region 462718	440 bp distal
Rr462719	regulatory region 462719	165 bp distal
Rr462720	regulatory region 462720	561 bp proximal
Tssr112751	transcription start site region 112751	1118 bp downstream
Tssr112752	transcription start site region 112752	1085 bp downstream
Tssr112753	transcription start site region 112753	1079 bp downstream
Tssr112754	transcription start site region 112754	761 bp downstream
Tssr112755	transcription start site region 112755	735 bp downstream
Tssr112756	transcription start site region 112756	672 bp downstream
Tssr115725	transcription start site region 115725	916 bp upstream