rs31521688 SNP Detail

Summary

• ID
  rs31521688
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8973607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT GTCCTTCACC ATCTTCCATT
  M
  TCTTAAATGA TTAATTCTTG TCTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47061601	NES11269273	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31521688					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47061601	NES11269273	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8973607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	1027 bp distal
Gm60663	predicted gene, 60663	1748 bp upstream
Laptm4a	lysosomal-associated protein transmembrane 4A	within coordinates
Rr403227	regulatory region 403227	1501 bp downstream
Rr462715	regulatory region 462715	1999 bp distal
Rr462716	regulatory region 462716	1759 bp distal
Rr462717	regulatory region 462717	1840 bp distal
Rr462718	regulatory region 462718	1258 bp distal
Rr462719	regulatory region 462719	983 bp distal
Rr462720	regulatory region 462720	107 bp distal
Tssr112751	transcription start site region 112751	1936 bp downstream
Tssr112752	transcription start site region 112752	1903 bp downstream
Tssr112753	transcription start site region 112753	1897 bp downstream
Tssr112754	transcription start site region 112754	1579 bp downstream
Tssr112755	transcription start site region 112755	1553 bp downstream
Tssr112756	transcription start site region 112756	1490 bp downstream
Tssr115725	transcription start site region 115725	1734 bp upstream