rs31521726 SNP Detail

Summary

• ID
  rs31521726
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190548003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT ATCTATCTAT CTATATATAT
  W
  TTTTTTTCAA GTTCAAAGTA CCTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45041465	mCV24181575	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss146499882	ENSMUSSNP3305878	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss320193976	CHEV_1_192639685	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31521726					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190548003 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70960	predicted gene, 70960			within coordinates
Rps6kc1	ribosomal protein S6 kinase polypeptide 1			Intron
				Noncoding-Transcript-Variant
Rr425988	regulatory region 425988			413 bp proximal