rs31521820 SNP Detail

Summary

• ID
  rs31521820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170414953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC GGATTATACT AAGAATTGGA
  Y
  TTTTCTTGCA ATTTGTATGT GCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45042236	mCV23245508	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss146138541	ENSMUSSNP3065159	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320111465	CHEV_1_172517515	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31521820					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170414953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi994	CpG island 994	1627 bp proximal
Nos1ap	nitric oxide synthase 1 (neuronal) adaptor protein	Intron
Rr423086	regulatory region 423086	817 bp proximal