rs31521857 SNP Detail

Summary

• ID
  rs31521857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180694402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT AGCTGCTTCC AGGCCTCTCA
  Y
  TGGGGATTTT TATTCTAGCT AGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45041168	mCV24024084	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146386935	ENSMUSSNP2590269	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320160129	CHEV_1_182796968	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31521857					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180694402 () rs orientation: forward

Symbol	Name	Function Class
Gm71256	predicted gene, 71256	1526 bp upstream
Sde2	SDE2 telomere maintenance homolog (S. pombe)	mRNA-UTR