rs31522264 SNP Detail

Summary

• ID
  rs31522264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78139118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGA CCGCGCACGC GCAAAATGTA
  R
  GTGGCCATCC CTGCACTTCT GATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss48061047	NES12086484	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A		G
ss148180910	ENSMUSSNP5952300	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325024237	CHEV_15_78085348	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31522264					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061047	NES12086484	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78139118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	within coordinates
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505234	regulatory region 505234	46 bp proximal
Rr505235	regulatory region 505235	1510 bp proximal
Tssr131904	transcription start site region 131904	1685 bp downstream
Tssr131905	transcription start site region 131905	1615 bp downstream
Tssr131906	transcription start site region 131906	24 bp downstream