rs31522266 SNP Detail

Summary

• ID
  rs31522266
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78139449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG TCTGGTGGAG ACTTAAGGGC
  R
  CTGAGCCGTG ATCCCCATTC CTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39359507	mCV27572934	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				G		A
ss48061049	NES12086485	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G	A	A	A		G	A	G		G
ss148180915	ENSMUSSNP882164	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss325024238	CHEV_15_78085679	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31522266					SNP	A	A	A	A	A	A	G	G	A	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061049	NES12086485	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78139449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	231 bp distal
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505234	regulatory region 505234	264 bp distal
Rr505235	regulatory region 505235	1179 bp proximal
Tssr131905	transcription start site region 131905	1946 bp downstream
Tssr131906	transcription start site region 131906	355 bp downstream