rs31522268 SNP Detail

Summary

• ID
  rs31522268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78140161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTGGGGG AGAGTAGGGT
  TTTAATCGAA GTCCTCTGCA AACAGAGGGG CTGTATCAGC ACCCTTCCAA ACCCTCAGTT
  TCCTTACCTA CAGAGAGGGA CACCACAGTG GTCAAGCCCT TCAAAGACTC AGCGTTCTCT
  CTGTCTCAGC AATGCTGTCC CTCTCCTCAG GCCTTGTTTG ACTTCACTGG GAACAGCAAA
  Y
  TGGAGCTAAG TTTCAAAGCT GGAGATGTGA TCTTCCTTCT CAGTAAGATC AACAAAGACT
  GGCTGGAGGT AAGCTGGGGA GAGGGGTTCA GAATCAGGAA GACTAACTAG AGGCAAGAAG
  GAGGGTGATG GCAGAGTACA TGGATGATGG GGTGGAAGTG GAATTGGAGG TGAGGGTGGA
  GGTCAGATGG AGATGAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061051	NES12086486	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31522268					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061051	NES12086486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78140161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7285	CpG island 7285	943 bp distal
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505234	regulatory region 505234	976 bp distal
Rr505235	regulatory region 505235	467 bp proximal
Rr505236	regulatory region 505236	1660 bp proximal
Tssr131906	transcription start site region 131906	1067 bp downstream