rs31522414 SNP Detail

Summary

• ID
  rs31522414
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8974098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATAGAGAA ATGCTGCCAA TATATCTGAA TGACTGAAGA
  GGTGTTTTTT TTCATCTTAA AAGGTTTGAA GCCCTTTATA AGTGCTGGGA ATTGCACCCA
  R
  GACAGCAACT AGTGTTCCTA GCTACTCCAG CGTGCCCTCC CCCCCCCCCC AGGTTTTTGT
  TTTGTTTTTA ACAGAGGGAT TGAGAGAGTT CTAAATCTGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47061607	NES11269183	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31522414					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47061607	NES11269183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8974098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	1518 bp distal
Laptm4a	lysosomal-associated protein transmembrane 4A	within coordinates
Rr403227	regulatory region 403227	1992 bp downstream
Rr462718	regulatory region 462718	1749 bp distal
Rr462719	regulatory region 462719	1474 bp distal
Rr462720	regulatory region 462720	598 bp distal
Tssr112756	transcription start site region 112756	1981 bp downstream