rs31522586 SNP Detail

Summary

• ID
  rs31522586
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153330284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCCAGTCTGG TCTGCAGAGT GATGGCTCAG CAAGTAAGAG CACTGACTGC TCTTCCTAAA
  GTCCCAAATT CAAATCACAG CAACATCATG GTGGCTCACA ACCATCCATG AGATCTGACC
  CCCTCTTCTG GTGTGGCAGA AGACAGCTAC AGTGTACTTA TGTATAATAA ATAAACCTTA
  GGGCTGGAGC GAGCGGAGTT GACTGGAGCA AGCGGAGGTC CTAAAAATTC AATTCCCAAC
  AACCACACGA AGGCTCACAA CCATCTGTAC AGCTACAGTG TACTCACATA CATAAATCTT
  W
  TAAAAAAATG AAAGAAAAGC ATGTTTAAGT GCAGTGAGAT AATCTACTAT GCAAGCTACT
  TAATCTAACT GGTGCTTAGA CCTCCATCTC ATGTGAAGAG ATCACTGCTT TGAGACTGTG
  GCAATGACAT CGACTAACAT CCAAATCTGG GAAACTAGAG CTGGAAGAAC AAGTTCTGGA
  CCTATGGAGG GCTCTTGAGT TTCAATACTG AAAAACATGA CTATACTCAA TGGTTCTCTG
  TAACTCCAGA CTACAAATCT TAGGCTCCCA CCATATAGGG GGGTGAACAG TGCATACAAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45041683	mCV23109248	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31522586					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153330284 () rs orientation: forward

Symbol	Name	Function Class
Dhx9	DExH-box helicase 9	1220 bp downstream
Rr420677	regulatory region 420677	688 bp distal
Shcbp1l	Shc SH2-domain binding protein 1-like	1964 bp downstream