rs31523398 SNP Detail

Summary

• ID
  rs31523398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191176027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTAACTCTAA TAAATTCTGT GTGTGTGTGT GTTCATTCTA TAAGTTCTGT TACTCTAGAG
  AACCCTGACT AATAATATGG AAGGCTCATG TCCCTAAAGC CCTCCACTTT ATCCCCTCCA
  TATGCTATTC TTAAACCACG TTGAATGTCT TGGTCTGTTG AGAAGGAAAA GGCTTGGGTT
  CAGTTTCACT TCTAGTCAGT CACTCAGTTA TGTCTTTCAG GAAGCTTCCC ACGTCCCTCC
  CAAGCAAGAC TGGAAAATCC TCAATGTACT AATGTTCTCT CTTTCTCTCT CTCTCTCTCT
  Y
  CTTTATTTCT AGATTTTGCT GAGTTCAAAG AGGGCTGAGG ATACGTGTTA TTAATTTCTT
  TATCCTTAAC ACTGAATTAG TTTAAGAACT AACAAGCATA TTAAAACAGG AAGGAAGAAA
  GAAAGGGAAG AAAGCCGAAT GAAGGAGGGA AAAATTCAAG CATGATGGTG CATGTCTATA
  ATCCCAGTAC CCAGGAGTCT GAGGCAGAAC GATTAGGAGT TCAAAGTTAG CCACCACCAC
  CCCCCCCCCC ACACACACAC ATAATGGGGA ATGAAAATCC TGGGGACATG ACAGCATACT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45043089	mCV23930967	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31523398					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191176027 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	1807 bp upstream
Tssr15793	transcription start site region 15793	1973 bp downstream