rs31523808 SNP Detail

Summary

• ID
  rs31523808
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTGGGAAG TGAACCTTAG AAGTTTGTGC
  TTGCCAGGCA CTGGTCTCTG CTATTGAGGC AGAAGAGGTC CAGCCTTTac acacacacac
  acacacacac acacacacac acacacacac acacacacat acaAAATCCC CTTCTATGCT
  K
  CTTTAAACAA TGTAAAATTA CTATTATGGT TATAATGAAG CAAGTGGCAT ATTTAATATA
  GGATACTAAT ACTATTCAAC ATAAAGAAAT ATACAGACTT GTAGCTCTGG TAGACAAATT
  ATTTTAGAAT TTTGTGGCTA TGAAAAAGTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45042440	mCV23137232	ABI	CRAMUS_MOUSE	f	SNP		G					T
ss49513608	NES12839771	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	G	G		G	G	T	G		G	T	T		T
ss145704598	ENSMUSSNP2341110	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320045532	CHEV_1_151950333	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31523808					SNP	T	G	T	T	G	G	T	G	G	T	G	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49513608	NES12839771	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978954 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1047 bp proximal
Rr24983	regulatory region 24983	1079 bp proximal
Rr31002	regulatory region 31002	1554 bp distal
Tssr242	transcription start site region 242	398 bp downstream
Tssr9227	transcription start site region 9227	1930 bp downstream
Tssr9228	transcription start site region 9228	1890 bp downstream
Tssr9229	transcription start site region 9229	1877 bp downstream
Tssr9230	transcription start site region 9230	1090 bp downstream
Tssr9231	transcription start site region 9231	1057 bp downstream
Tssr9232	transcription start site region 9232	1014 bp downstream
Tssr9233	transcription start site region 9233	558 bp downstream
Tssr9234	transcription start site region 9234	529 bp downstream
Tssr9235	transcription start site region 9235	498 bp downstream
Tssr9236	transcription start site region 9236	473 bp downstream
Tssr9237	transcription start site region 9237	441 bp downstream
Tssr9238	transcription start site region 9238	410 bp downstream
Tssr9239	transcription start site region 9239	376 bp downstream
Tssr9240	transcription start site region 9240	362 bp downstream
Tssr9241	transcription start site region 9241	332 bp downstream
Tssr9242	transcription start site region 9242	316 bp downstream
Tssr9243	transcription start site region 9243	189 bp downstream
Tssr9244	transcription start site region 9244	138 bp downstream
Tssr9245	transcription start site region 9245	102 bp downstream
Tssr9246	transcription start site region 9246	83 bp downstream
Tssr9247	transcription start site region 9247	42 bp upstream
Tssr9248	transcription start site region 9248	462 bp upstream
Tssr9249	transcription start site region 9249	489 bp upstream
Tssr9250	transcription start site region 9250	657 bp upstream
Tssr9251	transcription start site region 9251	703 bp upstream
Tssr9252	transcription start site region 9252	758 bp upstream
Tssr9253	transcription start site region 9253	788 bp upstream
Tssr9254	transcription start site region 9254	815 bp upstream
Tssr9255	transcription start site region 9255	834 bp upstream
Tssr9256	transcription start site region 9256	1074 bp upstream
Tssr9257	transcription start site region 9257	1098 bp upstream
Tssr9258	transcription start site region 9258	1121 bp upstream
Tssr9259	transcription start site region 9259	1146 bp upstream
Tssr9260	transcription start site region 9260	1201 bp upstream
Tssr9261	transcription start site region 9261	1256 bp upstream
Tssr9262	transcription start site region 9262	1264 bp upstream
Tssr9263	transcription start site region 9263	1286 bp upstream
Tssr9264	transcription start site region 9264	1331 bp upstream
Tssr9265	transcription start site region 9265	1362 bp upstream
Tssr9266	transcription start site region 9266	1451 bp upstream
Tssr9267	transcription start site region 9267	1742 bp upstream
Tssr9268	transcription start site region 9268	1798 bp upstream
Tssr14130	transcription start site region 14130	1941 bp upstream
Tssr14131	transcription start site region 14131	1885 bp upstream