rs31523844 SNP Detail

Summary

• ID
  rs31523844
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135304737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCA AATGTTAAAG GTTTAAGGTA
  S
  AGTAGCAAAT GGTGAAGCAA ACAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45042037	mCV23630667	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	C
ss145532383	ENSMUSSNP5821028	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss319989539	CHEV_1_137273576	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31523844					SNP	C	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135304737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi790	CpG island 790	1523 bp distal
Rr12587	regulatory region 12587	1337 bp distal
Rr28596	regulatory region 28596	1336 bp distal
Rr30685	regulatory region 30685	1064 bp proximal
Shisa4	shisa family member 4	1762 bp upstream
Tssr13850	transcription start site region 13850	1901 bp upstream
Tssr13851	transcription start site region 13851	1889 bp upstream
Tssr13852	transcription start site region 13852	1771 bp upstream
Tssr13853	transcription start site region 13853	1754 bp upstream
Tssr13854	transcription start site region 13854	1735 bp upstream
Tssr13855	transcription start site region 13855	1722 bp upstream
Tssr13856	transcription start site region 13856	1714 bp upstream