rs31523870 SNP Detail

Summary

• ID
  rs31523870
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135763521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatcttatg gatcttttga tctagtgagc
  aagccagaca CAGCAGCTCG CCATGACCAC AGTTTCTAAG CCCGGGGAGA ATTCCAATAA
  TCCCCTCTAC CACACTCTTA CTGCCAGACT AAGGAGAGTG GCCATTCTTG AGTTACTTCC
  K
  CCAGCGGAAG GAAGGAGGCT ACTTCTGTGA GGATGACATA GTGTGTGGCC TTGGGGCTCA
  TGGAGAAGAC TAGATACCCT CACCAAGGCC TGCAGAGCCA TCTATCTGCC TGAGGCCATT
  TGGCTCATGA GAAGCAGCCA GCAGCCCAGA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45042347	mCV24740880	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	T
ss145547959	ENSMUSSNP3096729	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
ss319993821	CHEV_1_137732360	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31523870					SNP	T	T	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135763521 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	920 bp distal
Rr419293	regulatory region 419293	1356 bp distal
Rr419294	regulatory region 419294	81 bp proximal
Rr419295	regulatory region 419295	641 bp proximal
Rr419296	regulatory region 419296	1109 bp proximal
Rr419297	regulatory region 419297	1966 bp proximal
Tnnt2	troponin T2, cardiac	571 bp upstream
Tssr9005	transcription start site region 9005	597 bp upstream