rs31524115 SNP Detail

Summary

• ID
  rs31524115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130728781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGGCAATAC ATCCTAATTC TGAAGGCTTT TTTTGGGGGG GGGGGTTGTT GCTGCTGCTG
  CTGTTGTTTT CTTCATGGTG AGTTTTGACA GGCCTTGTGG CAAAAGAGCT ATGTTTTCCA
  ACCCCTGTGT TTCCCAGAGC TATGGAAAAG GATGGACATA CCGACCTGGG AATGGGCGTC
  ACTGCTGGTG GCCTGGTAGT GTTCTGCTCT ACAGGGACAC CGGGACCTGC TCCCATCAGC
  ATCTTGTCTT TTCAGAACTT AAGTCAACTG AGTTTGCTTG TTCATGTGAA TCACTTCCAC
  Y
  GTGAGATCCC CTGTGGAGCA CTATAAAGAC AAGAGTTGCA CACTTTGGAT TTTTTTTGTT
  TGTTTCTATT TACTGATCTT GCCAGAGTTA GGAGAACCAA AAGGAGCCTT GGTCTCTATG
  AGAACTGGCG GCTTAGCGTC AGAGGCAAGG CACGTGCCAA CATCATCAGC CTAGTGTCTG
  ATGCGAGACC TTCCACCCTA GAACCACAAT TGCTACCGCT TCTGGTGGCA GAGAGATGTT
  TATCCTTCCC AAGGACTGAG AGCCCTGGAC CCCTTTATGC AAGGTCCCTG ATCACCCAGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45543100	mCV23363574	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31524115					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130728781 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	within coordinates
Gm64594	predicted gene, 64594	within coordinates
Gm64601	predicted gene, 64601	within coordinates
Rr367556	regulatory region 367556	1898 bp upstream
Rr585239	regulatory region 585239	235 bp proximal
Rr585240	regulatory region 585240	1245 bp proximal
Rr585241	regulatory region 585241	1917 bp proximal
Tssr31681	transcription start site region 31681	1453 bp upstream