rs31524240 SNP Detail

Summary

• ID
  rs31524240
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58544970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAT TGAGCTCTGA AAATCAAGCT
  S
  ACAACTTGGG TTTGGTTCAC TATCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss45042903	mCV22736694	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		C	G
ss49403511	NES12780770	PERLEGEN	MM_PANEL2	f	SNP				C			C	G	C
ss149138143	ENSMUSSNP4320273	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs31524240					SNP	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49403511	NES12780770	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58544970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	567 bp distal
Gm15834	predicted gene 15834	within coordinates
Orc2	origin recognition complex, subunit 2	856 bp upstream
Rr396056	regulatory region 396056	562 bp downstream
Rr411447	regulatory region 411447	713 bp distal
Rr411448	regulatory region 411448	828 bp distal
Rr411449	regulatory region 411449	644 bp distal
Rr411450	regulatory region 411450	119 bp distal
Tssr6780	transcription start site region 6780	649 bp downstream
Tssr11783	transcription start site region 11783	869 bp upstream
Tssr11784	transcription start site region 11784	846 bp upstream