rs31524600 SNP Detail

Summary

• ID
  rs31524600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4875898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG TTTATGATCT TGATTATCAT
  R
  ATTTCACAGG TATAGACTTT GCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45042056	mCV23845269	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss319612481	CHEV_1_4795756	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31524600					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4875898 () rs orientation: forward

Symbol	Name	Function Class
A930006A01Rik	RIKEN cDNA A930006A01 gene	1582 bp downstream
Cpgi9	CpG island 9	1766 bp proximal
Gm70766	predicted gene, 70766	1589 bp downstream
Rr407434	regulatory region 407434	1600 bp proximal
Tssr5801	transcription start site region 5801	1967 bp upstream
Tssr10888	transcription start site region 10888	1985 bp downstream