rs31524808 SNP Detail

Summary

• ID
  rs31524808
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165065487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTGTCTG GATTAATTCA TTCCGTTGGC ATCCTATCCT
  TGGTTCCTAC ATAGTTACTC TATTTCCATT GCCTACGGAA AGTAGGGCGT CTCAGCTTCC
  S
  CAGAGGATAA AGATGTTCAT CCCGAATAGT GGAGGATTGT CTACCATCAC TGACCTCCAG
  AGGTTGGCCC CTGACGCACT TCCCAAGGAG GCTGGGGTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45041865	mCV24497794	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	C
ss145997571	ENSMUSSNP3204412	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs31524808					SNP	G	G	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165065487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	509 bp distal
Rr372385	regulatory region 372385	within coordinates
Rr422343	regulatory region 422343	986 bp distal
Rr422344	regulatory region 422344	1376 bp distal
Rr422345	regulatory region 422345	485 bp distal
Rr422346	regulatory region 422346	958 bp distal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	922 bp upstream
Tssr9804	transcription start site region 9804	1411 bp downstream
Tssr14765	transcription start site region 14765	962 bp upstream
Tssr14766	transcription start site region 14766	927 bp upstream