rs31526241 SNP Detail

Summary

• ID
  rs31526241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78133608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT TCACTGTCGG AGCTTCTCAT
  R
  GAGCTGTCTC ATTAAGTCTC TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48061011	NES12086660	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	A		G	A	A	G		G
ss148180755	ENSMUSSNP2984521	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss325024220	CHEV_15_78079838	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31526241					SNP	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061011	NES12086660	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78133608 () rs orientation: forward

Symbol	Name	Function Class
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505230	regulatory region 505230	1331 bp distal
Rr505231	regulatory region 505231	537 bp distal
Tssr131899	transcription start site region 131899	1952 bp downstream
Tssr131900	transcription start site region 131900	1455 bp downstream
Tssr131901	transcription start site region 131901	1335 bp downstream
Tssr131902	transcription start site region 131902	1207 bp upstream
Tssr131903	transcription start site region 131903	1480 bp upstream
Tssr135191	transcription start site region 135191	1645 bp upstream