rs31527289 SNP Detail

Summary

• ID
  rs31527289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78134035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCC ATGGATCCCG CCTAAAAGCA
  Y
  GGCAACCCCT TTGCCTGAGT CTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48061021	NES12086642	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	C	T	T		C	T	T	C		C
ss148180790	ENSMUSSNP4111899	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss325024222	CHEV_15_78080265	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31527289					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061021	NES12086642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78134035 () rs orientation: forward

Symbol	Name	Function Class
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505230	regulatory region 505230	1758 bp distal
Rr505231	regulatory region 505231	964 bp distal
Rr505232	regulatory region 505232	1974 bp proximal
Tssr131900	transcription start site region 131900	1882 bp downstream
Tssr131901	transcription start site region 131901	1762 bp downstream
Tssr131902	transcription start site region 131902	780 bp upstream
Tssr131903	transcription start site region 131903	1053 bp upstream