rs31527486 SNP Detail

Summary

• ID
  rs31527486
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCTGCG CGCGAGGGGC
  GGGGCTTTCC CGCCCATTCC GAGCTCTCCC GCGCCTCGTC ACTTTGATTG GTGTACAGGC
  GGCCCGGATT CGATGCGTGC GTCACAGGAA TGGGCGGGCT GTGGAGGTGG GCGGGGAAAA
  GCCGAGCTGA AACCACAGTT CTCGCGGTGT CAGAAGTCTC GTGGCTGAAG CTCTGGCGGT
  K
  CGCGCGTTTT CTCTTCTTGG CTGCGTTCTT CTCTGGGACC CAAAGTCTAA GGTCCCTTCG
  TTGCCGCCTC CCCCGGCATC ACTTCCTATG GCGCCGGCCC TTTGTCCCCG AGAGCTGTTG
  GCGGCTCCTC TGCCCCCATC GGGGTTGATG GTTCCGCTTG CGCCCTTCCG CTTGCCCTTT
  TGATCTGATC TCACTTTTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45543139	mCV24054449	ABI	CRAMUS_MOUSE	f	SNP		G	T			G		G
ss60445525	NES15941784	PERLEGEN	MM_PANEL2	f	SNP	G			G	G		T	G	G	G		G	G	G
ss135766573	ENSMUSSNP4596841	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31527486					SNP	G	G	T	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445525	NES15941784	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	within coordinates
Gm9369	predicted pseudogene 9369	1355 bp downstream
Prss12	serine protease 12 neurotrypsin (motopsin)	1990 bp downstream
Rr397991	regulatory region 397991	1553 bp downstream
Rr584523	regulatory region 584523	1668 bp distal
Rr584524	regulatory region 584524	1533 bp distal
Rr584525	regulatory region 584525	within coordinates
Rr584526	regulatory region 584526	332 bp proximal
Rr584527	regulatory region 584527	723 bp proximal
Snhg8	small nucleolar RNA host gene 8	251 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	521 bp upstream
Tssr31551	transcription start site region 31551	19 bp downstream
Tssr31552	transcription start site region 31552	1 bp upstream
Tssr35502	transcription start site region 35502	246 bp upstream
Tssr35503	transcription start site region 35503	328 bp downstream