rs31527660 SNP Detail

Summary

• ID
  rs31527660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153364107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GAAACAGAGA CTGACAGACC
  Y
  CCGTAAGTTC AAAACAGTCT GGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45043491	mCV25366616	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs31527660					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153364107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi867	CpG island 867	466 bp distal
Dhx9	DExH-box helicase 9	701 bp upstream
Rr396394	regulatory region 396394	540 bp downstream
Rr396395	regulatory region 396395	737 bp upstream
Rr420682	regulatory region 420682	764 bp distal
Rr420684	regulatory region 420684	826 bp distal
Rr420685	regulatory region 420685	211 bp distal
Rr420686	regulatory region 420686	559 bp proximal
Tssr9459	transcription start site region 9459	1440 bp downstream
Tssr9460	transcription start site region 9460	538 bp downstream
Tssr14270	transcription start site region 14270	699 bp upstream
Tssr14271	transcription start site region 14271	680 bp upstream
Tssr14272	transcription start site region 14272	671 bp upstream