rs31527874 SNP Detail

Summary

• ID
  rs31527874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172526608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTG GTCCTGACCT ACTGTTGTGA
  R
  CCCTGAAGCA CCTCCTGGGA TTACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45043685	mCV24591826	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss49751108	NES13026312	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A	A		G	A	A		A
ss146199188	ENSMUSSNP2255127	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320126985	CHEV_1_174629172	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31527874					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751108	NES13026312	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172526608 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crp	C-reactive protein, pentraxin-related			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149			188 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1			36 bp proximal
Rr423653	regulatory region 423653			1269 bp distal
Rr423654	regulatory region 423654			976 bp distal
Tssr10246	transcription start site region 10246			978 bp downstream
Tssr10247	transcription start site region 10247			30 bp downstream
Tssr10248	transcription start site region 10248			14 bp upstream
Tssr10249	transcription start site region 10249			38 bp upstream
Tssr10250	transcription start site region 10250			93 bp upstream
Tssr10251	transcription start site region 10251			149 bp upstream
Tssr10252	transcription start site region 10252			215 bp upstream
Tssr10253	transcription start site region 10253			264 bp upstream
Tssr10254	transcription start site region 10254			329 bp upstream