rs3152788 SNP Detail

Summary

• ID
  rs3152788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46606668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTTGGA AGAAATAAAA
  TGGAAAGGTT TTTTTTTTGT TGTTGTTGTT TGTTTTGTTT TTTCGGTTTT TCAAGACAGG
  TTCCTCTGTG TAGCCCTGGC TGTCCTAGAA TTCACTTCGT AGACCAGACT GGCCTCGAAC
  TCACAGAGAT TTGCCTGCCT CCGCCTCCCA AGTGCTGGGA TTGAAGACCT GGCTTGGAAA
  R
  CTGTTTTAAG TGGGAAAGTA TCCTGTGTTT GTGGATCTAA GATCGTCATG ATCATCACAT
  TTCCCGAAAG GTTTGGCGTA ATCCCTTAGT GAAACTTCAG CTGTTACAAA AGTCTGAAAA
  CTGGGCTGGA GATGTATCTA AACGATAAAG CAGTTGCTTA GGATATCCAG AAGGCCTGGT
  TTTGGTCTGC AGCACACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51891873	NES14911535	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3152788					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891873	NES14911535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46606668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19131	CpG island 19131			1154 bp proximal
Gm39012	predicted gene, 39012			963 bp upstream
Rr646810	regulatory region 646810			837 bp proximal
Rr646811	regulatory region 646811			986 bp proximal
Rr646812	regulatory region 646812			1597 bp proximal
Rr646813	regulatory region 646813			1619 bp proximal
Rr646814	regulatory region 646814			1630 bp proximal
Tssr72574	transcription start site region 72574			1524 bp downstream
Tssr72575	transcription start site region 72575			1555 bp downstream
Uevld	UEV and lactate/malate dehyrogenase domains			Intron
				Noncoding-Transcript-Variant