rs3152789 SNP Detail

Summary

• ID
  rs3152789
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46608150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGCACC GGGAGGCTGA
  AGCAGGAGGA TTGCCGCGAC TTCCAGGCCA GCCTGGGAAA GAGTATGTAT GGGTGTGTCA
  AAACGACAAA ACAATCTTGG AAAAAAGGAC ATGGGGTGGG GGGAATGGGC TGGGGCGACG
  CGCAGTGACG AGAATGCTAG GTCCCGTCCG CCCCCCGACC TGCCTGCACC TTGCCTAGCA
  K
  CCGTCTCACG CCCTCACAGT CGAACTCCAT GGTCAGCAGG GGCGCGTTCT TCGGCCGCAG
  TCACTGGGCT TGTTTCAAAA CACGCTGGGA ACGGAGGCCG CACGGGCCCA AACTTCCGCA
  GAGGACGGTC CCCGCCTTCT GCAGTAGGCG GAGCTCGGGT AGGATGCATC CAGACGCCGC
  GCCCCGTCAG TCAGGTATCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51891871	NES14911529	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3152789					SNP	G	G	G	G	G	G	G	G	G	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891871	NES14911529	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46608150 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19131	CpG island 19131			within coordinates
Gm39012	predicted gene, 39012			within coordinates
Rr646810	regulatory region 646810			497 bp distal
Rr646811	regulatory region 646811			within coordinates
Rr646812	regulatory region 646812			115 bp proximal
Rr646813	regulatory region 646813			137 bp proximal
Rr646814	regulatory region 646814			148 bp proximal
Tssr72574	transcription start site region 72574			42 bp downstream
Tssr72575	transcription start site region 72575			73 bp downstream
Uevld	UEV and lactate/malate dehyrogenase domains			Coding-NonSynonymous
				Noncoding-Transcript-Variant