rs31527895 SNP Detail

Summary

• ID
  rs31527895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37299226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aggaatcct ggaatcagtt gctctatgga
  tcctgaaggg caattATTGA ACAAGAATAA CCTGAGGACT AGGAGTATCA GAACTTGTAT
  GGGTCATATA TGATGACAGC CTTAATTTTC ATTTTCAGCA AAGGTCTTGT GCTAGCAGCC
  R
  AGACACCTTG AACTTGTAAA AGTGCCTCAT GGCGTAAGCT CTGGGGGTCA AGCCCAGCAC
  TGTTTCCCTG AACACTACTA CTGGTGATGC CTGCTTGGTA GGCTTTGATC TGAATTTTTG
  AAGTTTGATG ATTCATATTT TCAAGTACAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45042641	mCV24143404	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss319691081	CHEV_1_37316990	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31527895					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37299226 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Cpgi160	CpG island 160	1133 bp proximal
Gm69908	predicted gene, 69908	212 bp downstream
Rr409496	regulatory region 409496	1491 bp distal