rs3152791 SNP Detail

Summary

• ID
  rs3152791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46608451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGGCCCA AACTTCCGCA
  GAGGACGGTC CCCGCCTTCT GCAGTAGGCG GAGCTCGGGT AGGATGCATC CAGACGCCGC
  GCCCCGTCAG TCAGGTATCG ACTAGACCCG GAGACCAGAT CTCAGAGCCC CGCCCCGTCC
  CACCCCGCCC TTTCCAGTCC GAGGACTCCC GCGGGTTCTG CATCTACCTT TACCCTAAAC
  Y
  AGAGACTGAC AGCCGCCCAG GGCTCCGGGG ACTGGAGCGC CCTGCGAGGT GGAAAAATAC
  CGCCCGCTTG CTGGGGGTGG GTGGGGTGGG GGTGGGAATT TAGCTAGGAA GAACCAAAGA
  ACGAACAGAT GCAAGCGACA TGCGAGTTTC CTGGGAGACT AGAATTCAGC ACAAAATTGG
  GGGGTGGGGG AGAATTATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51891867	NES14911533	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs3152791					SNP	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891867	NES14911533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46608451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19131	CpG island 19131	26 bp distal
Gm39012	predicted gene, 39012	within coordinates
Rr646810	regulatory region 646810	798 bp distal
Rr646811	regulatory region 646811	187 bp distal
Rr646812	regulatory region 646812	154 bp distal
Rr646813	regulatory region 646813	143 bp distal
Rr646814	regulatory region 646814	within coordinates
Tssr72574	transcription start site region 72574	229 bp upstream
Tssr72575	transcription start site region 72575	223 bp upstream
Uevld	UEV and lactate/malate dehyrogenase domains	176 bp upstream