rs31528012 SNP Detail

Summary

• ID
  rs31528012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95540306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGATGAG AGCCCATTAA
  AAAGTGTGCT GGGCTGGACG AGCTGACATG CATGCCTTGG GAAGTGGAAG CAGGGGAGCA
  GGAGCTGAAG GTCATCATCA GCTGCATAAA CACGAAACCC GAGATAGGGA AGTGCTTGCT
  CCTAAGCCCT GAACTTCAGA AATAGAGGCA GAGAATTAAA TGGTCAAGGC TCTGTGGTAC
  R
  GCTCCATCTC AAAAAAAAAT TGGTTGGTTA AGGGCACTTG AAAAGAAGCC TGAGTTTGAT
  TCCTGGGACC CACAACAATG GAATAGAACT TACTCTTAGT ACCCAGTAGA GGGCACTGTC
  ACACGCACAG TGACATGTGA ACACCCAACA ACACCAACAC ATGCCCCCCC CCCCCAAAAA
  AAAGAGAGAA AGAGAGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45542954	mCV23592303	ABI	CRAMUS_MOUSE	f	SNP		G	A				A		A
ss46775897	NES10750035	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G		G	A	A	A	G	A	G	G
ss135512452	ENSMUSSNP6298815	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31528012					SNP	G	G	A	A	A	G	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46775897	NES10750035	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95540306 () rs orientation: forward

Symbol	Name	Function Class
Ensa	endosulfine alpha	893 bp downstream
Rr69362	regulatory region 69362	within coordinates
Rr73413	regulatory region 73413	695 bp proximal
Rr82135	regulatory region 82135	within coordinates
Rr82136	regulatory region 82136	1696 bp proximal