rs31528224 SNP Detail

Summary

• ID
  rs31528224
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126220038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGGGCC TTAGATTTCT
  GTTTGGAAAA ACAGGAACAC TAGTAGTGTG TCCTATTGGG TTACTATAAA GATTAAATGG
  AGACATAACT GTAAAATCCT ATTGCAGGGC AGGTACAGAT GCCACGGTCA GACTGTCATC
  TTAGCATGTA ACCCTGTGTT TGATGCCCCG CAGAAAACAA ACGCTACAAA CAAATGAACA
  M
  ACCTGTCTGT CCTAGGGCAG GCACCCAAAA TATGGGCGCT GTCATTTCTG AAGCCGGACA
  CCCAGATGTA TACTGCTGCA AGCATGCTGC CCAGAGGTGG TGCTGTTTTA GGTTCTAAAG
  CTAAAAGCTG TACCATGTGT CCCTCTCTAC AAAGTCTGTG CTTCGGCCCT GCCCTGGTAA
  AATAACAAGC AACTAACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46041480	mCV22749693	ABI	CRAMUS_MOUSE	f	SNP		A						C
ss47255816	NES11555289	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C	A	C	C	C	A	C	C	A	C
ss145875050	ENSMUSSNP5053147	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31528224					SNP	C	A	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47255816	NES11555289	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126220038 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	833 bp upstream
Rr655535	regulatory region 655535	1007 bp distal
Rr655536	regulatory region 655536	594 bp proximal
Rr655537	regulatory region 655537	1027 bp proximal
Rr655538	regulatory region 655538	1521 bp proximal