rs31528356 SNP Detail

Summary

• ID
  rs31528356
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165482849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGG GGCAGCTCTG GTCCTGATAC
  M
  GCATAAACCA TCAGGGCCAC CTACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45042844	mCV22778954	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss146004329	ENSMUSSNP5849285	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31528356					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165482849 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr372388	regulatory region 372388	1052 bp upstream
Rr422410	regulatory region 422410	1220 bp distal
Rr422411	regulatory region 422411	1463 bp distal
Rr422412	regulatory region 422412	108 bp proximal
Tssr9810	transcription start site region 9810	1394 bp downstream
Tssr9811	transcription start site region 9811	within coordinates
Tssr9812	transcription start site region 9812	230 bp upstream