rs31528562 SNP Detail

Summary

• ID
  rs31528562
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116203002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTACACCC TTTAAAGATG ATAAAAAAGT CAGAAAGAAA
  AAGATTTGTT TGTTATGCTG AGGCTAGCTT TACTATATTG ACATTAATTC ACAGGAACAC
  S
  ATGTTGAGAA TATCACTTGG TCATCAGGAA CTCATCAGAA TCATCTGTTG GAATTTTTTA
  AAAGCCCAAA GTATTTTTTG AAAACTTACA ATTTTTATTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061732	NES11712305	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31528562					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061732	NES11712305	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116203002 () rs orientation: forward

Symbol	Name	Function Class
Rr147130	regulatory region 147130	1002 bp distal
Rr147131	regulatory region 147131	1524 bp proximal
Tssr58357	transcription start site region 58357	217 bp upstream
Tssr58358	transcription start site region 58358	925 bp upstream
Washc2	WASH complex subunit 2	within coordinates