rs31529230 SNP Detail

Summary

• ID
  rs31529230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37609963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCAGTAAG TAGGGTCTCA CCATGTAGCT GTGGCTGGTC
  TGGAACTTGT TATGTAGACC GATCTCGAAC TAACATCTGC CTGTTGAGTG CTGGGATTAA
  R
  CAGTGGTCTG TCACCAAACC CAGCTTATAA CCACTTTTCA CCTCAAATGA TCTTAAGAAT
  TCTAAACACC AGAGTTTAAC CTCTAGTCTA AATACTTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45543069	mCV24341473	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss134807905	ENSMUSSNP5531982	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss320710770	CHEV_3_37454736	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31529230					SNP	A	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37609963 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Gm12564	predicted gene 12564			369 bp downstream
Rr575503	regulatory region 575503			1789 bp distal
Rr575504	regulatory region 575504			691 bp proximal
Rr575505	regulatory region 575505			1717 bp proximal