rs31529403 SNP Detail

Summary

• ID
  rs31529403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177573986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGGAGGTCA AGAGCCAGGG TTAAGGGAAT GGGGATCCCA TATAGGATCT CAAAAGGGGT
  CAGGTTAAAA TGGTAGGCGG TGTTCCGGGA AGGAGCACCA CCCAGTCAGC ACCAGTCTCC
  AAGGACAATT TAGTTAAAGG TCTCTTTTAG GGTTCTGTTC ATTCTCTCTT CCTGTCCTGA
  CCATTGGAGC ACAATGGAGC TTCCAATTAG TCCCCGATCT CTCTGCCAAT CCCTGACTTA
  CCCTAGAGAT AAAAGAAGGA CCATTGTCTT ATCCAATTAC CTTGGGTACT CCGAACCTCA
  R
  AAAAATTTCC TCTAATATCT TCTTGGCTAT CATGGTTTCC TGCTTGGTGG GGAAAGCCCC
  AACTCATCCA GAGAAAGTAT CCACAAACAC TAGAAGGTAT TTGTAACCAT ATTTTCCTGG
  CTTAACTTCT GTAAAATCGA CCTACCAATA TACTCTAGGC TGTTCTCCCC TAGGTCTTTT
  GCCCTGTTTA TTCTTGCTGG CATACCTTAC ACTGTTGTAT TGTATCTCAG GCTAAAACCC
  TGAGGTCCTT AGATCCCTTG ACTGCTTGGA CAAGCTTTTT ATCCCCTAAA TGAGTCCATC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45043337	mCV22349538	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31529403					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177573986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr424056	regulatory region 424056			1169 bp distal
Rr424057	regulatory region 424057			1790 bp proximal
Spmip3	sperm microtubule inner protein 3			Intron
				Noncoding-Transcript-Variant
Tssr15447	transcription start site region 15447			1777 bp upstream