rs31529404 SNP Detail

Summary

• ID
  rs31529404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116203076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAAGTT GGCACCCAAA
  ACCAGCCAGT ACACCCTTTA AAGATGATAA AAAAGTCAGA AAGAAAAAGA TTTGTTTGTT
  ATGCTGAGGC TAGCTTTACT ATATTGACAT TAATTCACAG GAACACCATG TTGAGAATAT
  CACTTGGTCA TCAGGAACTC ATCAGAATCA TCTGTTGGAA TTTTTTAAAA GCCCAAAGTA
  W
  TTTTTGAAAA CTTACAATTT TTATTCCATT AGATTTAAAG AAAAAAGCTG TTGATATCAG
  GAAAAATAAA AAAATAAAAA TTTAAAAAGA CTTATTTAGG AACAGATTGC CTCAGAGAAG
  GGGTGGGTTT TTTTTTTTTT TTTTTGACGG TTTTGCTATG TAGTCATGGT TGGTTATCAT
  GTAGCCCTGA GCTGTTCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061734	NES11712306	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31529404					SNP	T	T	A	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061734	NES11712306	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116203076 () rs orientation: forward

Symbol	Name	Function Class
Rr147130	regulatory region 147130	1076 bp distal
Rr147131	regulatory region 147131	1450 bp proximal
Tssr58357	transcription start site region 58357	143 bp upstream
Tssr58358	transcription start site region 58358	851 bp upstream
Washc2	WASH complex subunit 2	within coordinates