rs31529406 SNP Detail

Summary

• ID
  rs31529406
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116203078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGTTGG CACCCAAAAC
  CAGCCAGTAC ACCCTTTAAA GATGATAAAA AAGTCAGAAA GAAAAAGATT TGTTTGTTAT
  GCTGAGGCTA GCTTTACTAT ATTGACATTA ATTCACAGGA ACACCATGTT GAGAATATCA
  CTTGGTCATC AGGAACTCAT CAGAATCATC TGTTGGAATT TTTTAAAAGC CCAAAGTATT
  W
  TTTGAAAACT TACAATTTTT ATTCCATTAG ATTTAAAGAA AAAAGCTGTT GATATCAGGA
  AAAATAAAAA AATAAAAATT TAAAAAGACT TATTTAGGAA CAGATTGCCT CAGAGAAGGG
  GTGGGTTTTT TTTTTTTTTT TTTGACGGTT TTGCTATGTA GTCATGGTTG GTTATCATGT
  AGCCCTGAGC TGTTCTTGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48061736	NES11712307	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31529406					SNP	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061736	NES11712307	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116203078 () rs orientation: forward

Symbol	Name	Function Class
Tssr58357	transcription start site region 58357	141 bp upstream
Tssr58358	transcription start site region 58358	849 bp upstream
Washc2	WASH complex subunit 2	within coordinates