rs31529410 SNP Detail

Summary

• ID
  rs31529410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116203388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT TTTCTTTCTT ATTCTAGAAT
  Y
  ACCTCCGTCC CCTAAACCTG GAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48061740	NES11712287	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C	C	T		C	C	C	C		T
ss133575404	ENSMUSSNP4589419	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321917405	CHEV_6_116176445	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31529410					SNP	C	C	T	T	C	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061740	NES11712287	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116203388 () rs orientation: forward

Symbol	Name	Function Class
Rr147130	regulatory region 147130	1388 bp distal
Rr147131	regulatory region 147131	1138 bp proximal
Tssr58357	transcription start site region 58357	163 bp downstream
Tssr58358	transcription start site region 58358	539 bp upstream
Washc2	WASH complex subunit 2	within coordinates