rs31529412 SNP Detail

Summary

• ID
  rs31529412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116204010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCGGTCT TTCTTAAGAA
  TTGTAGAAAT CCATTTTGTC ATCACTTTAT AAGGAGTGGC TAGGGCTTGG GGTGGGTGGG
  TACCCAGGAG CCCTAGAAAG CATTGGAGTG TTCATAAGTC CAGTGTATTC ACTGGTGCTC
  TGAGCTCACA TTCTGTATGA ATTCAGAGGC TTTGCATGGG AATGTGACAG AGTAGTTCAG
  Y
  GCTTGTTTCA TATGTGCATG GCTCTGGTTT CCTGTCCAAC ACTACAGAGG ACTGCATGTG
  TTGGGGAAAG GAGAGAAGAG GAAAGAAGGG GAGAGCCTGA CAGACCAGCA AGGGGGGAGG
  AGCGAGGGCA TCAGTCCAGG TTCCTGAGGG CTAGGCAGCC CTGGGCTGCA TTTTGCTGTC
  CAACACCTGC ACAAAGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48061742	NES11712206	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31529412					SNP	T	T	C	T	T	C	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48061742	NES11712206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116204010 () rs orientation: forward

Symbol	Name	Function Class
Rr132422	regulatory region 132422	1591 bp proximal
Rr147131	regulatory region 147131	516 bp proximal
Tssr58357	transcription start site region 58357	785 bp downstream
Tssr58358	transcription start site region 58358	69 bp downstream
Washc2	WASH complex subunit 2	within coordinates