rs31529664 SNP Detail

Summary

• ID
  rs31529664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171809643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG CTTTTCATGC CTCTATGACC
  W
  ATACTCAACT TCAGCAAGCA CTACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49748130	NES13029845	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	A	T		T	T	T	T		A		T	T	T		T
ss120005063	PARCsnp_1.16609	PARC_SEQ	INBRED	f	SNP								A		T
ss120007716	PARCsnp_1.06125	PARC_SEQ	INBRED	f	SNP								A		T
ss146179264	ENSMUSSNP6050093	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T					A
ss320121981	CHEV_1_173912207	CHEVERUD	SCREENING_POP	f	SNP													T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31529664					SNP	T	T	T	T	T	A	T	A	T	T	T	T	T	A	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748130	NES13029845	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171809643 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	195 bp upstream
Rr423419	regulatory region 423419	1172 bp distal
Rr423420	regulatory region 423420	26 bp proximal