rs31529669 SNP Detail

Summary

• ID
  rs31529669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171809371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA AAGAAAGTAA ATGTGTTTTG
  Y
  GCACTCAGTC TGAACAGGTG CTACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45191988	mCV25391364	ABI	CRAMUS_MOUSE	f	SNP	T	T					C	T
ss49748135	NES13029840	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T			T		C	T		T
ss120005054	PARCsnp_1.16604	PARC_SEQ	INBRED	f	SNP							C	T
ss120007704	PARCsnp_1.06119	PARC_SEQ	INBRED	f	SNP							C	T
ss146179248	ENSMUSSNP3833525	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss320121974	CHEV_1_173911935	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31529669					SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748135	NES13029840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171809371 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	467 bp upstream
Rr423419	regulatory region 423419	900 bp distal
Rr423420	regulatory region 423420	298 bp proximal