rs31529671 SNP Detail

Summary

• ID
  rs31529671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171809185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACTGTAT ATTAAACCCA
  GGGCCTCATA CTGCTGGGCA AGTATTCTAC TACTGAGCTA CTCCAGCACA GCTACTCTAC
  CACTGAGCTA CTCCAAGACA TTACTTAACC ATTTGGATAT CTATTACCTC ATTTGCACTT
  CCCAACAAGC TCATACAATA AACAAAATTG ATATTTTTCT GTCCTTATTT GCAAGTGAAA
  R
  AAACACGTTT GCGGAAGTCC TTGTCTTGGC CTCGTGCTTC AATGACTCCC AGAGCAGACC
  ACACGGACCT TCATCCTTAC TTCTCAACCC TTCATTTACC CAAAGTAAGA GACTTCCTTT
  CCTGTGTATC TGTAGGTGTA TCTGGACAAT TCTCCCCAAA GCAGAAAGAA AGTAAATGTG
  TTTTGCGCAC TCAGTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45113287	mCV25391375	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss49748137	NES13029838	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		G	A	G	A		G	A	A	A		G
ss120005049	PARCsnp_1.16602	PARC_SEQ	INBRED	f	SNP							G		A
ss120007700	PARCsnp_1.06117	PARC_SEQ	INBRED	f	SNP							G		A
ss146179240	ENSMUSSNP5389012	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320121972	CHEV_1_173911749	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31529671					SNP	A	A	A	A	G	A	G	G	A	G	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748137	NES13029838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171809185 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	653 bp upstream
Rr423419	regulatory region 423419	714 bp distal
Rr423420	regulatory region 423420	484 bp proximal