rs31529672 SNP Detail

Summary

• ID
  rs31529672
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171808834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA ACAGCCTTCT TGCTTCTACT
  S
  GTGTTTCAAG GGAAGTTAAG AAGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45195760	mCV25391386	ABI	CRAMUS_MOUSE	f	SNP		G						C		G
ss49748139	NES13029858	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	C	G		G	G	G	G		C	G	G	G		G
ss120005040	PARCsnp_1.16597	PARC_SEQ	INBRED	f	SNP								C		G
ss120007691	PARCsnp_1.06113	PARC_SEQ	INBRED	f	SNP								C		G
ss146179236	ENSMUSSNP2231317	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320121968	CHEV_1_173911398	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31529672					SNP	G	G	G	G	G	C	G	C	G	G	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748139	NES13029858	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171808834 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	1004 bp upstream
Rr423419	regulatory region 423419	363 bp distal
Rr423420	regulatory region 423420	835 bp proximal