rs31529673 SNP Detail

Summary

• ID
  rs31529673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171808280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTTGGC CCTAAATCCC
  CACGCTCACA CAATCCTGTG CGTCAGCCTT TTATTTAACT ACTGACCCAA GTCTGAAGCT
  CTTAACAATG TTTTAGCAAA GGGGTGTTTT CATCTTGGCA GTAAATGGGC AGACCTATTC
  ATACTGGGGA CTCAGAGAGA GGACGGTAGC AATGGCCACA CATCACTCGT GTACGGCCTC
  R
  TCGGGTTTGA AAGTCCTTTC CCGTACTTCT CATATGACCC TTATGATCCA CATATTAAAG
  AAAAGAAAAA GACATTAGGA ACTGGTTTAT CTTACCCATG TTTCCGAGTT TGTTTCTCAG
  TTGCCATGAC AAAAACATGT AACCAAAAGC AACTTGGCGG AGGGAAAGGT TTATTTGACT
  TACAGGTTAT AGGTTACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49748142	NES13029868	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31529673					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748142	NES13029868	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171808280 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	1558 bp upstream
Rr423419	regulatory region 423419	within coordinates
Rr423420	regulatory region 423420	1389 bp proximal