rs31530230 SNP Detail

Summary

• ID
  rs31530230
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171577470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCTTCC TCCCTCTCTT
  GTAGATAGCC CTGGCAATGT CCAGTCTGCT GGCCATGTTC ATGCTATTTC TTTCTCTTTC
  TGCTCTGCTC TCTTCTATCT GCATCTGGAT ATTTTCTCCC TTTTATATAC AATAAAAGCT
  TTTGCCTTAA CCATACCATG GAGAGGTTGT GTCTGCCGTT TCTCTACTGT GCTTCCCTGT
  K
  TACACCTGCC AAGTCTACAT ACTAAGTGGC TCTGGTGGAC AGCTTCTCCC CTCCAATGGG
  CACTTTTTGA GTTAGGTCTT TAATTCTTCC AGTATAGATA ATAGGAAACC ATTATTTCTC
  CCAGATTTTA ATTTTAAGTA AATCTGATCA CTGTGCCAAA ATAATTTTTC TAAAGCAACA
  TCAGGTCCAA AGAAAACTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49748730	NES13032847	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31530230					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748730	NES13032847	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171577470 () rs orientation: forward

Symbol	Name	Function Class
Rr423388	regulatory region 423388	982 bp distal